STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_2406PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sde:Sde_0941 putative D-mannonate oxidoreductase protein. (482 aa)    
Predicted Functional Partners:
Jden_2405
PFAM: Glucuronate isomerase; KEGG: mmr:Mmar10_0230 glucuronate isomerase.
 
 
 0.997
Jden_2407
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ecr:ECIAI1_1631 putative enolase/dehydratase.
 
  
 0.985
Jden_2404
KEGG: vei:Veis_1391 periplasmic binding protein/LacI transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
 
     0.731
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; Ketopantoate reductase ApbA/PanE domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dvu:DVU3159 glycerol-3-phosphate dehydrogenase (NAD(P)+).
      
 0.596
Jden_2403
PFAM: Acetyl xylan esterase; KEGG: mlo:mlr6993 acetyl xylan esterase.
       0.518
Jden_2408
KEGG: pde:Pden_2932 carbohydrate kinase, thermoresistant glucokinase family; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase.
     
 0.513
Jden_2209
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: ppr:PBPRB1732 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase.
 
  
 0.472
Jden_0066
TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; KEGG: bte:BTH_II0908 protein-N p-phosphohistidine- sugar phosphotransferase.
  
  
 0.450
Jden_1166
Putative phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; KEGG: mlo:mll7959 hypothetical protein.
     
 0.440
Jden_0467
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase; Belongs to the FGGY kinase family.
 
   
 0.415
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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