STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_2488Hypothetical protein; Belongs to the WXG100 family. (111 aa)    
Predicted Functional Partners:
Jden_2491
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcz:BCZK1985 FtsK/SpoIIIE family protein.
   
 
 0.790
Jden_2487
Hypothetical protein.
       0.655
Jden_1034
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcy:Bcer98_2445 cell divisionFtsK/SpoIIIE.
   
 
 0.594
Jden_2127
Hypothetical protein.
   
 
 0.594
Jden_2490
PFAM: protein of unknown function DUF571; KEGG: hypothetical protein.
     
 0.552
Jden_2489
Hypothetical protein.
       0.531
Jden_2492
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.489
Jden_2493
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
       0.489
Jden_2494
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: mgm:Mmc1_3144 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.489
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: bav:BAV3016 glutamate-1-semialdehyde 2,1- aminomutase.
       0.489
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.