STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_2491PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcz:BCZK1985 FtsK/SpoIIIE family protein. (1313 aa)    
Predicted Functional Partners:
Jden_2490
PFAM: protein of unknown function DUF571; KEGG: hypothetical protein.
 
 
 0.984
Jden_2054
PFAM: protein of unknown function DUF909; Belongs to the WXG100 family.
   
 
 0.970
Jden_2489
Hypothetical protein.
  
    0.810
Jden_2488
Hypothetical protein; Belongs to the WXG100 family.
   
 
 0.790
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: bav:BAV3016 glutamate-1-semialdehyde 2,1- aminomutase.
     
 0.763
Jden_2492
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.753
Jden_2493
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
       0.746
Jden_2494
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: mgm:Mmc1_3144 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.746
Jden_0459
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR.
  
 
   0.659
Jden_1076
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
 
 0.651
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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