STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_2546Hypothetical protein; KEGG: aba:Acid345_1760 serine/threonine protein kinase. (561 aa)    
Predicted Functional Partners:
Jden_2545
TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN.
 
    0.921
Jden_2544
Hypothetical protein; KEGG: similar to mucin 17.
 
     0.790
Jden_2547
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_2753 thioredoxin reductase.
      0.690
Jden_2543
PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_4891 hydrolase, NUDIX family; Belongs to the Nudix hydrolase family.
       0.680
Jden_2418
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: glo:Glov_2100 putative phytochrome sensor protein.
  
 
 0.620
Jden_0038
Capsular exopolysaccharide family; KEGG: gur:Gura_1670 non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
    
 
 0.615
Jden_2548
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tcx:Tcr_0127 thioredoxin; Belongs to the thioredoxin family.
  
    0.614
Jden_1571
PFAM: metallophosphoesterase.
 
   
 0.588
Jden_2542
KEGG: hypothetical protein; TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.506
Jden_1870
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rme:Rmet_5327 periplasmic sensor signal transduction histidine kinase.
  
 
   0.485
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.