STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACU95183.1PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa)    
Predicted Functional Partners:
ACU95184.1
Hypothetical protein.
       0.773
ACU98048.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, TIGR02947 family; RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.620
ACU95182.1
Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF952).
       0.499
ACU95181.1
Hypothetical protein.
       0.468
ACU98049.1
TIGRFAM: anti-sigma factor, TIGR02949 family.
  
 
 0.442
ACU95362.1
Hypothetical protein.
   
   0.415
Your Current Organism:
Saccharomonospora viridis
NCBI taxonomy Id: 471857
Other names: S. viridis DSM 43017, Saccharomonospora viridis ATCC 15386, Saccharomonospora viridis DSM 43017, Saccharomonospora viridis NCIB 9602, Saccharomonospora viridis NRRL B-3044, Saccharomonospora viridis str. DSM 43017, Saccharomonospora viridis strain DSM 43017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.