STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACU96062.1Transcriptional regulator, CdaR family; PFAM: GAF domain. (619 aa)    
Predicted Functional Partners:
ACU96061.1
PFAM: Sugar (and other) transporter; TIGRFAM: metabolite-proton symporter.
 
     0.825
ACU96060.1
PFAM: short chain dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase.
 
   
 0.796
ACU96714.1
Uncharacterized conserved protein; PFAM: Conserved TM helix.
 
   
 0.619
ACU98654.1
PFAM: PAS fold; PAS fold; GGDEF domain; PAS fold; EAL domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; PAS domain S-box.
  
 
 0.564
ACU98080.1
Hypothetical protein.
  
    0.521
map-2
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
   
   0.495
ACU98024.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.488
ACU98292.1
PFAM: Bacterial regulatory proteins, tetR family.
  
 
 
 0.481
ACU98652.1
Predicted redox protein, regulator of disulfide bond formation; PFAM: OsmC-like protein.
   
    0.465
ACU96672.1
PFAM: PAS fold; GGDEF domain; EAL domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; PAS domain S-box.
   
 
 0.450
Your Current Organism:
Saccharomonospora viridis
NCBI taxonomy Id: 471857
Other names: S. viridis DSM 43017, Saccharomonospora viridis ATCC 15386, Saccharomonospora viridis DSM 43017, Saccharomonospora viridis NCIB 9602, Saccharomonospora viridis NRRL B-3044, Saccharomonospora viridis str. DSM 43017, Saccharomonospora viridis strain DSM 43017
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