STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACU97389.1Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (402 aa)    
Predicted Functional Partners:
ACU97388.1
PFAM: MerR family regulatory protein; TIGRFAM: DNA binding domain, excisionase family.
 
   
 0.892
ACU97387.1
Hypothetical protein.
 
  
 0.869
ACU97383.1
DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: FtsK/SpoIIIE family.
 
   
 0.660
ACU97386.1
Hypothetical protein.
  
  
 0.596
ACU98066.1
Predicted amidophosphoribosyltransferase.
   
    0.459
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.452
ACU96988.1
Site-specific recombinase XerD; PFAM: Phage integrase family; Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.
  
     0.444
ACU98640.1
PFAM: Prephenate dehydrogenase.
  
    0.443
ACU98051.1
Uncharacterized conserved protein; PFAM: Uncharacterised ACR, COG2135; Belongs to the SOS response-associated peptidase family.
   
  
 0.432
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.426
Your Current Organism:
Saccharomonospora viridis
NCBI taxonomy Id: 471857
Other names: S. viridis DSM 43017, Saccharomonospora viridis ATCC 15386, Saccharomonospora viridis DSM 43017, Saccharomonospora viridis NCIB 9602, Saccharomonospora viridis NRRL B-3044, Saccharomonospora viridis str. DSM 43017, Saccharomonospora viridis strain DSM 43017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.