STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACU97631.1TIGRFAM: lycopene cyclase domain. (110 aa)    
Predicted Functional Partners:
ACU97632.1
TIGRFAM: lycopene cyclase domain.
 
     0.960
ACU97630.1
PFAM: Squalene/phytoene synthase.
 
   
 0.911
ACU97635.1
Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] domain.
 
     0.882
ACU97634.1
Uncharacterized conserved protein; PFAM: Flavin containing amine oxidoreductase.
 
     0.869
ACU97633.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
 
     0.861
ACU97629.1
UDP-galactopyranose mutase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
   
 0.826
ACU97357.1
Hypothetical protein.
  
     0.564
ACU97303.1
Hypothetical protein.
  
     0.421
ACU97774.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
     0.419
Your Current Organism:
Saccharomonospora viridis
NCBI taxonomy Id: 471857
Other names: S. viridis DSM 43017, Saccharomonospora viridis ATCC 15386, Saccharomonospora viridis DSM 43017, Saccharomonospora viridis NCIB 9602, Saccharomonospora viridis NRRL B-3044, Saccharomonospora viridis str. DSM 43017, Saccharomonospora viridis strain DSM 43017
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