STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACU98119.1Uncharacterized conserved protein; PFAM: RmuC family. (305 aa)    
Predicted Functional Partners:
ACU95797.1
Hypothetical protein.
  
     0.731
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.623
ACU98117.1
ATPase involved in DNA repair; TIGRFAM: exonuclease SbcC.
       0.604
ACU95928.1
Hypothetical protein.
  
     0.541
ACU98120.1
Hypothetical protein.
 
     0.537
ACU95145.1
PFAM: Helix-turn-helix.
  
    0.526
ACU97572.1
RES domain-containing protein; PFAM: RES domain.
 
    0.522
ACU97567.1
PFAM: Acyltransferase family.
  
     0.520
ACU96540.1
Hypothetical protein.
  
     0.501
ACU95211.1
Hypothetical protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.498
Your Current Organism:
Saccharomonospora viridis
NCBI taxonomy Id: 471857
Other names: S. viridis DSM 43017, Saccharomonospora viridis ATCC 15386, Saccharomonospora viridis DSM 43017, Saccharomonospora viridis NCIB 9602, Saccharomonospora viridis NRRL B-3044, Saccharomonospora viridis str. DSM 43017, Saccharomonospora viridis strain DSM 43017
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