STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV06983.1Vitamin B12 dependent methionine synthase, activation domain protein; KEGG: ctc:CTC01807 1.1e-09 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; COG: NOG21937 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96. (232 aa)    
Predicted Functional Partners:
EDV06982.1
Uroporphyrinogen decarboxylase (URO-D); KEGG: mac:MA0146 4.6e-24 mtbA; methylcobalamin:CoM methyltransferase isozyme A K00599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.944
EDV06984.1
B12 binding domain protein; KEGG: sit:TM1040_1470 2.4e-43 5-methyltetrahydrofolate--homocysteine S-methyltransferase K00548; COG: COG5012 Predicted cobalamin binding protein.
 
  
 0.846
EDV06985.1
Hypothetical protein; KEGG: syn:slr0536 0.0029 hemE; uroporphyrinogen decarboxylase K01599; COG: NOG13231 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.767
metF
KEGG: bfr:BF4092 8.6e-158 5,10-methylenetetrahydrofolate reductase K00297; COG: COG0685 5,10-methylenetetrahydrofolate reductase; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.752
EDV06986.1
Glycosyl hydrolase family 3 C-terminal domain protein; KEGG: bfs:BF0766 0. putative beta-glucosidase K05349; COG: COG1472 Beta-glucosidase-related glycosidases; Psort location: Periplasmic, score: 9.44; Belongs to the glycosyl hydrolase 3 family.
       0.666
EDV06987.1
Hypothetical protein; COG: COG3934 Endo-beta-mannanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.664
EDV06990.1
Hypothetical protein.
       0.599
EDV06988.1
Glycosyl hydrolase family 26; KEGG: bfs:BF0771 1.8e-54 manA; putative mannosidase K01218; COG: COG4124 Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
       0.592
EDV06989.1
Carbohydrate binding module (family 6); KEGG: bha:BH1908 0.00017 glucan 1,4-beta-glucosidase K05349; COG: COG5498 Predicted glycosyl hydrolase.
       0.592
fhs
KEGG: bfr:BF2202 4.4e-264 formate-tetrahydrofolate ligase K01938; COG: COG2759 Formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family.
    
 0.571
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.