STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV07005.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (321 aa)    
Predicted Functional Partners:
EDV07006.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: ava:Ava_0899 5.1e-57 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K00811; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.96; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.859
EDV07009.1
Hypothetical protein.
 
     0.705
PorQ
Hypothetical protein.
  
     0.508
EDV06059.1
Two component regulator propeller; COG: COG0642 Signal transduction histidine kinase.
 
     0.469
EDV07625.1
PPIC-type PPIASE domain protein; KEGG: chu:CHU_0192 1.0e-34 possible peptidyl-prolyl cis-trans isomerase K01802; COG: COG0760 Parvulin-like peptidyl-prolyl isomerase; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.463
EDV07004.1
Hypothetical protein.
       0.448
PorU
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
  
     0.428
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.