STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV07032.1Glycosyl hydrolase, family 88; COG: COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins. (432 aa)    
Predicted Functional Partners:
RhaD
KEGG: bth:BT3766 2.1e-124 rhamnulose-1-phosphate aldolase K01629; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
       0.734
EDV07272.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 1.8e-63 exo-poly-alpha-D-galacturonosidase, putative K01238; COG: COG5434 Endopolygalacturonase; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
     0.727
EDV07598.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 4.5e-31 exo-poly-alpha-D-galacturonosidase, putative K01238; COG: COG5434 Endopolygalacturonase; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.722
RhaT
L-rhamnose-proton symport protein (RhaT); KEGG: atu:Atu1379 0.0018 cdsA; phosphatidate cytidylyltransferase K00981; COG: COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
       0.707
EDV05294.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 1.1e-59 exo-poly-alpha-D-galacturonosidase, putative K01238; COG: COG5434 Endopolygalacturonase; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
   
 0.695
EDV05133.1
GDSL-like protein; KEGG: bld:BLi04100 3.4e-44 hypothetical protein; COG: COG2755 Lysophospholipase L1 and related esterases.
     0.694
EDV03663.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 2.0e-87 exo-poly-alpha-D-galacturonosidase, putative K01238; COG: COG5434 Endopolygalacturonase; Psort location: Extracellular, score: 9.72; Belongs to the glycosyl hydrolase 28 family.
     0.688
EDV05310.1
Pectinesterase; KEGG: sus:Acid_1249 1.3e-58 pectinesterase K01051; COG: COG4677 Pectin methylesterase; Psort location: Extracellular, score: 9.72.
 
     0.686
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.673
EDV05308.1
GDSL-like protein; KEGG: sus:Acid_1249 2.5e-57 pectinesterase K01051; COG: COG2755 Lysophospholipase L1 and related esterases; Psort location: Extracellular, score: 9.78.
 
   
 0.647
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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