STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV05967.1Hypothetical protein; COG: NOG19122 non supervised orthologous group. (84 aa)    
Predicted Functional Partners:
EDV05247.1
Hypothetical protein; COG: NOG08818 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.760
EDV06052.1
Hypothetical protein; COG: NOG14459 non supervised orthologous group.
  
   
 0.756
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.745
uppP
Putative undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.745
EDV05968.1
Efflux ABC transporter, permease protein; COG: COG2177 Cell division protein; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
     0.739
folK
KEGG: bth:BT3216 3.8e-52 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine K00950; COG: COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.
       0.725
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.725
gldH
Gliding motility-associated lipoprotein GldH; COG: NOG23399 non supervised orthologous group.
 
     0.714
EDV05420.1
Putative RNA methyltransferase, RsmD family; KEGG: fnu:FN1329 2.9e-22 methyltransferase K00599; COG: COG0742 N6-adenine-specific methylase; Psort location: Cytoplasmic, score: 8.96.
  
    0.710
EDV04229.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; KEGG: lwe:lwe1056 2.7e-20 N-acetylmuramoyl-L-alanine amidase, family 4; COG: COG1705 Muramidase (flagellum-specific).
  
     0.696
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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