STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV03290.1Hypothetical protein; COG: NOG23391 non supervised orthologous group. (371 aa)    
Predicted Functional Partners:
HtpG
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: eci:UTI89_C0501 8.6e-71 htpG; chaperone HSP90, heat shock protein C 62.5 K04079; COG: COG0326 Molecular chaperone, HSP90 family; Psort location: Cytoplasmic, score: 9.26.
  
 0.574
EDV07358.1
Putative Replication protein; Psort location: Cytoplasmic, score: 8.96.
   
 0.562
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.545
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.532
EDV02982.1
Ankyrin repeat protein; KEGG: cne:CNA04190 3.4e-08 palmitoyltransferase K00680; COG: COG0666 FOG: Ankyrin repeat.
  
 0.531
EDV02984.1
Ankyrin repeat protein; KEGG: dre:393543 6.9e-08 ilk; integrin linked kinase K06272; COG: COG0666 FOG: Ankyrin repeat.
  
 0.531
EDV06839.1
Threonine/alanine tRNA ligase second additional domain protein; KEGG: sru:SRU_1141 6.7e-16 alanyl-tRNA synthetase K01872; COG: COG0013 Alanyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97.
   
 0.525
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.525
EDV06378.1
Hypothetical protein.
  
 0.518
EDV06381.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
 0.518
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.