STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV03297.1Transcriptional regulator, AraC family; KEGG: aci:ACIAD0344 0.0021 ada; bifunctional protein [includes: transcriptional regulator of DNA repair (AraC/Xyl family); O6-methylguanine-DNA methyltransferase] K00567; COG: NOG16818 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96. (275 aa)    
Predicted Functional Partners:
EDV03298.1
Ketopantoate reductase PanE/ApbA; KEGG: bcn:Bcen_5528 1.3e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.
 
     0.854
EDV05196.1
Hypothetical protein; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.465
rpoD
RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.448
EDV04904.1
KEGG: bce:BC3740 1.1e-11 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.444
EDV06086.1
Sigma-70 region 2; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.430
EDV04902.1
KEGG: bur:Bcep18194_C7173 2.5e-06 two component transcriptional regulator, AraC family; COG: NOG18216 non supervised orthologous group.
 
 
 0.429
EDV03295.1
Hypothetical protein; COG: COG5483 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.96.
       0.406
EDV03296.1
Hypothetical protein; COG: NOG09698 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
       0.406
EDV04622.1
Transcriptional regulator, effector binding domain protein; KEGG: bca:BCE_3772 1.5e-09 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.402
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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