STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV03356.1Bacterial sugar transferase; KEGG: rso:RS02342 1.8e-52 RSp1008; probable glycosyl transferase transmembrane protein; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 9.82. (208 aa)    
Predicted Functional Partners:
EDV03352.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: cno:NT01CX_1789 2.5e-64 perosamine synthetase, putative K01726; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.918
EDV02967.1
Chain length determinant protein; KEGG: pgi:PG0436 2.8e-97 capsular polysaccharide transport protein, putative K00903; COG: COG0489 ATPases involved in chromosome partitioning; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.892
EDV03354.1
Hypothetical protein; COG: NOG17471 non supervised orthologous group.
  
  
 0.831
EDV03353.1
Hypothetical protein; COG: NOG11965 non supervised orthologous group.
 
     0.830
EDV03355.1
Acetyltransferase, GNAT family; KEGG: sep:SE0046 1.7e-17 spermidine acetyltransferase K00657; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
  
    0.785
EDV03357.1
Glycosyltransferase, group 1 family protein; KEGG: sat:SYN_01144 8.7e-30 glycosyltransferase K00754; COG: COG0438 Glycosyltransferase.
 
  
 0.773
EDV02955.1
Chain length determinant protein; KEGG: pgi:PG0436 1.4e-37 capsular polysaccharide transport protein, putative K00903; COG: COG0489 ATPases involved in chromosome partitioning; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.712
gmd-2
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.680
EDV03193.1
Glycosyltransferase, group 1 family protein; KEGG: cgb:cg0420 1.7e-35 glycosyl transferase K00754; COG: COG0438 Glycosyltransferase.
 
     0.671
EDV02966.1
COG: COG1596 Periplasmic protein involved in polysaccharide export.
 
  
 0.498
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.