STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV03965.1Outer membrane insertion signal domain protein; COG: NOG06416 non supervised orthologous group; Psort location: OuterMembrane, score: 9.52. (844 aa)    
Predicted Functional Partners:
EDV03964.1
Conserved hypothetical protein TIGR01200.
 
     0.877
EDV03210.1
Putative DNA-binding protein; COG: NOG34048 non supervised orthologous group.
  
     0.643
EDV03940.1
Putative DNA-binding protein; COG: NOG34048 non supervised orthologous group.
  
     0.629
EDV03963.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ban:BA4832 1.6e-30 phoR; sensory box histidine kinase PhoR K07636; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.605
EDV03962.1
Response regulator receiver domain protein; KEGG: chu:CHU_3042 3.1e-25 two-component response regulator K02483; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.26.
 
     0.584
EDV05489.1
TonB-linked outer membrane protein, SusC/RagA family; COG: NOG26203 non supervised orthologous group; Psort location: OuterMembrane, score: 9.49.
  
   
 0.557
EDV04466.1
COG: COG2067 Long-chain fatty acid transport protein; Psort location: OuterMembrane, score: 9.52.
  
   
 0.529
EDV03249.1
Periplasmic binding protein; COG: COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
  
 0.515
EDV05488.1
Hypothetical protein; COG: NOG25454 non supervised orthologous group.
  
     0.502
EDV05839.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.499
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.