STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV04278.1Hypothetical protein; KEGG: bfs:BF1254 9.4e-41 exc; putative transposon excision protein K03169; COG: COG0550 Topoisomerase IA. (123 aa)    
Predicted Functional Partners:
EDV04280.1
KEGG: bth:BT0105 5.2e-174 DNA topoisomerase I (Omega-protein) K03169; COG: COG0550 Topoisomerase IA.
 
     0.892
EDV06637.1
Hypothetical protein; KEGG: lic:LIC12689 6.5e-34 ATP-dependent DNA helicase K03654; COG: COG0514 Superfamily II DNA helicase; Psort location: Cytoplasmic, score: 8.96.
  
 0.749
EDV07398.1
Hypothetical protein; KEGG: mta:Moth_0349 2.2e-24 DNA topoisomerase K01862; COG: COG0550 Topoisomerase IA; Psort location: Cytoplasmic, score: 8.96.
  
     0.692
EDV04276.1
Hypothetical protein; COG: NOG09947 non supervised orthologous group.
 
 
 
 0.687
EDV03150.1
HRDC domain protein; KEGG: pmm:PMM1102 7.6e-07 recD; possible exodeoxyribonuclease V 67 kD polypeptide K03581; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; Psort location: Cytoplasmic, score: 8.96.
  
 0.605
EDV04277.1
Hypothetical protein.
       0.594
recQ-2
KEGG: bth:BT1848 3.4e-266 recQ; ATP-dependent DNA helicase recQ K03654; COG: COG0514 Superfamily II DNA helicase; Psort location: Cytoplasmic, score: 8.96.
 
 0.546
recQ
KEGG: bfr:BF4076 0. recQ; ATP-dependent DNA helicase RecQ K03654; COG: COG0514 Superfamily II DNA helicase; Psort location: Cytoplasmic, score: 8.96.
 
 0.539
EDV07748.1
KEGG: bfr:BF3933 1.1e-278 recQ; ATP-dependent DNA helicase RecQ K03654; COG: COG0514 Superfamily II DNA helicase; Psort location: Cytoplasmic, score: 8.96.
 
 0.535
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.520
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.