STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV04283.1Helicase C-terminal domain protein; KEGG: ehi:3.t00009 0.00071 ATP-dependent chromatin remodeling protein SNF2H, putative K01509; COG: COG0827 Adenine-specific DNA methylase; Psort location: OuterMembrane, score: 9.49. (875 aa)    
Predicted Functional Partners:
EDV04282.1
N-6 DNA Methylase; KEGG: sab:SAB1668c 2.5e-06 hsdM; type I restriction-modification system M subunit K00571; COG: COG4646 DNA methylase.
     0.985
EDV04281.1
Hypothetical protein; COG: NOG19108 non supervised orthologous group.
 
    0.946
EDV05572.1
Hypothetical protein; COG: NOG19108 non supervised orthologous group.
 
    0.764
EDV02975.1
Hypothetical protein; COG: NOG19108 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
 
    0.697
traN-4
Conjugative transposon TraN protein; COG: NOG26275 non supervised orthologous group.
 
   0.671
EDV04275.1
Hypothetical protein; COG: NOG30592 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
 
    0.660
EDV03120.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.655
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.655
traN-7
Conjugative transposon TraN protein; COG: NOG26275 non supervised orthologous group.
 
   0.640
EDV03478.1
Hypothetical protein; COG: NOG30592 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
 
    0.639
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.