STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV05033.1Cyclic nucleotide-binding domain protein; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (233 aa)    
Predicted Functional Partners:
EDV04418.1
Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 5.1e-05 crp; CRP-cAMP transcriptional dual regulator K00924; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
     0.596
EDV05034.1
Glycosyl hydrolase family 20, catalytic domain protein; KEGG: bfr:BF1036 0. beta-hexosaminidase precursor K01207; COG: COG3525 N-acetyl-beta-hexosaminidase; Psort location: Periplasmic, score: 9.76.
  
    0.593
EDV05040.1
Hypothetical protein; KEGG: cpf:CPF_1523 0.0023 sensory box histidine kinase; COG: NOG14470 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
  
     0.535
EDV06990.1
Hypothetical protein.
  
 0.511
EDV05031.1
Hypothetical protein; COG: NOG25960 non supervised orthologous group; Psort location: OuterMembrane, score: 9.49.
 
   
 0.500
glnA-3
Glutamate--ammonia ligase, catalytic domain protein; KEGG: bth:BT4339 0. glutamine synthetase K01915; COG: COG3968 Uncharacterized protein related to glutamine synthetase.
     
 0.491
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.480
EDV06888.1
COG: COG0589 Universal stress protein UspA and related nucleotide-binding proteins; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.474
EDV04987.1
Hypothetical protein; COG: NOG26558 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.473
rpoC
Putative DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.455
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.