STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV05294.1Polygalacturonase (pectinase); KEGG: tma:TM0437 1.1e-59 exo-poly-alpha-D-galacturonosidase, putative K01238; COG: COG5434 Endopolygalacturonase; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family. (534 aa)    
Predicted Functional Partners:
EDV05133.1
GDSL-like protein; KEGG: bld:BLi04100 3.4e-44 hypothetical protein; COG: COG2755 Lysophospholipase L1 and related esterases.
 
 0.964
EDV05308.1
GDSL-like protein; KEGG: sus:Acid_1249 2.5e-57 pectinesterase K01051; COG: COG2755 Lysophospholipase L1 and related esterases; Psort location: Extracellular, score: 9.78.
 
 0.857
EDV05296.1
Glycosyl hydrolase, family 43; KEGG: ccr:CC2802 3.5e-42 xylosidase/arabinosidase K01198:K01209; COG: COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
    0.843
EDV05311.1
Glycosyl hydrolase, family 88; COG: COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
  
 0.822
EDV05266.1
Pectinesterase; KEGG: sus:Acid_1249 1.4e-29 pectinesterase K01051; COG: COG2755 Lysophospholipase L1 and related esterases; Psort location: Extracellular, score: 9.71.
 
 
 0.815
EDV07038.1
Glycosyl hydrolase, family 88; KEGG: sus:Acid_3201 1.1e-08 sialate O-acetylesterase; COG: COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
     0.791
EDV05310.1
Pectinesterase; KEGG: sus:Acid_1249 1.3e-58 pectinesterase K01051; COG: COG4677 Pectin methylesterase; Psort location: Extracellular, score: 9.72.
 
  
 0.791
EDV05295.1
Hypothetical protein; COG: COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
 
     0.769
EDV03890.1
Glycosyl hydrolase, family 88; COG: COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
  
 0.765
EDV07551.1
GDSL-like protein; KEGG: bld:BLi04100 1.3e-36 hypothetical protein; COG: NOG09008 non supervised orthologous group.
    0.758
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.