STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV05303.1SusD family protein; COG: NOG31573 non supervised orthologous group. (591 aa)    
Predicted Functional Partners:
EDV05302.1
TonB-linked outer membrane protein, SusC/RagA family; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport; Psort location: OuterMembrane, score: 9.52.
 
     0.954
EDV06458.1
TonB-linked outer membrane protein, SusC/RagA family; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport; Psort location: OuterMembrane, score: 9.49.
 
 
 
 0.802
EDV03811.1
Hypothetical protein; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport; Psort location: OuterMembrane, score: 9.52.
 
 
 
 0.798
EDV05141.1
TonB-linked outer membrane protein, SusC/RagA family; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport; Psort location: OuterMembrane, score: 9.52.
 
 
 
 0.782
EDV05299.1
TonB-linked outer membrane protein, SusC/RagA family; COG: NOG26669 non supervised orthologous group; Psort location: OuterMembrane, score: 9.52.
 
 
 
 0.782
EDV05143.1
TonB-linked outer membrane protein, SusC/RagA family; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
   0.779
EDV07561.1
TonB-linked outer membrane protein, SusC/RagA family; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport; Psort location: OuterMembrane, score: 9.49.
 
  
 0.778
EDV07744.1
TonB-linked outer membrane protein, SusC/RagA family; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport; Psort location: OuterMembrane, score: 9.52.
 
 
   0.773
EDV07548.1
TonB-linked outer membrane protein, SusC/RagA family; KEGG: sas:SAS1981 0.0088 putative potassium-transporting ATPase B chain K01547; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport; Psort location: OuterMembrane, score: 9.52.
 
     0.748
EDV05865.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.738
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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