STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV05418.1Hypothetical protein; COG: NOG19144 non supervised orthologous group. (228 aa)    
Predicted Functional Partners:
EDV05419.1
Hypothetical protein; COG: NOG19143 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
 
     0.907
EDV05420.1
Putative RNA methyltransferase, RsmD family; KEGG: fnu:FN1329 2.9e-22 methyltransferase K00599; COG: COG0742 N6-adenine-specific methylase; Psort location: Cytoplasmic, score: 8.96.
 
     0.833
EDV04980.1
Tetratricopeptide repeat protein; COG: NOG09955 non supervised orthologous group.
  
     0.773
EDV04975.1
Hypothetical protein; COG: NOG11654 non supervised orthologous group.
  
     0.772
EDV05417.1
Hypothetical protein; KEGG: bfs:BF0679 6.2e-226 putative ATP-dependent exodeoxyribonuclease K01144; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
 
     0.762
EDV07433.1
Hypothetical protein; COG: NOG14449 non supervised orthologous group.
  
     0.754
EDV07432.1
Hypothetical protein; COG: NOG14448 non supervised orthologous group.
  
     0.700
EDV03399.1
Positive regulator of sigma(E), RseC/MucC; COG: NOG19088 non supervised orthologous group.
  
     0.687
EDV07439.1
TonB-dependent receptor; COG: NOG11646 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
  
     0.669
EDV03268.1
LysM domain protein; KEGG: bbu:BB0625 2.3e-08 N-acetylmuramoyl-L-alanine amidase, putative K01448; COG: COG1388 FOG: LysM repeat; Psort location: OuterMembrane, score: 9.52.
  
     0.624
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.