STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV05439.1Glycosyl hydrolase, family 43; KEGG: sde:Sde_0822 5.8e-14 alpha-L-arabinofuranosidase K01209; COG: COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (326 aa)    
Predicted Functional Partners:
EDV05438.1
Hypothetical protein; COG: NOG18174 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.46.
  
    0.709
EDV06165.1
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: rba:RB3405 1.7e-136 putative hydrolase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.554
EDV06477.1
Hypothetical protein.
 
     0.518
EDV06476.1
SusD family protein; COG: NOG30008 non supervised orthologous group.
  
     0.500
EDV05440.1
Cupin domain protein; KEGG: azo:azo0951 0.00021 conserved hypothetical phosphomannose protein K01809; COG: COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
     
 0.449
EDV07168.1
SusD family protein.
  
     0.448
EDV06125.1
KEGG: lwe:lwe0730 7.3e-16 glycosyl hydrolase, putative K01238; COG: COG4833 Predicted glycosyl hydrolase.
  
   
 0.443
EDV07163.1
SusD family protein; COG: NOG25802 non supervised orthologous group.
  
     0.430
EDV03642.1
Glycosyl hydrolase, family 43; KEGG: sde:Sde_0786 3.8e-29 arabinan endo-1,5-alpha-L-arabinosidase; COG: COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.417
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.