STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV05442.1Hypothetical protein; KEGG: lpf:lpl2307 0.0075 probable cation-transporting ATPase K01529; COG: NOG26849 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00. (531 aa)    
Predicted Functional Partners:
EDV05443.1
Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG1566 Multidrug resistance efflux pump.
 
 
 0.949
EDV05444.1
COG: COG1538 Outer membrane protein; Psort location: OuterMembrane, score: 9.92.
 
  
 0.946
EDV05445.1
Transcriptional regulator, AraC family; KEGG: bli:BL05281 4.1e-10 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.751
EDV05010.1
COG: COG1538 Outer membrane protein.
 
  
 0.746
EDV03106.1
Type III restriction enzyme, res subunit; KEGG: vch:VC2506 0.0033 hepA; RNA polymerase-associated protein HepA K03580; COG: COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
  
     0.707
EDV04658.1
TonB family domain protein; COG: NOG19138 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.670
EDV04535.1
Hypothetical protein; COG: NOG35802 non supervised orthologous group.
  
     0.646
EDV05852.1
Hypothetical protein; COG: NOG25094 non supervised orthologous group.
  
   
 0.642
EDV04492.1
Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG1566 Multidrug resistance efflux pump; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.628
EDV05011.1
Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG1566 Multidrug resistance efflux pump.
 
 
 0.601
Your Current Organism:
Bacteroides intestinalis
NCBI taxonomy Id: 471870
Other names: B. intestinalis DSM 17393, Bacteroides intestinalis 341, Bacteroides intestinalis DSM 17393, Bacteroides intestinalis JCM 13265, Bacteroides intestinalis str. DSM 17393, Bacteroides intestinalis strain DSM 17393
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.