STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR69278.1Type VI secretion system secreted protein Hcp. (172 aa)    
Predicted Functional Partners:
SDR78162.1
Type VI secretion system protein ImpC.
 
 0.986
SDR78182.1
Type VI secretion system protein ImpB.
 
 0.986
SDR69306.1
Type VI secretion system secreted protein VgrG.
 
  
 0.890
SDR77978.1
Type VI secretion system protein ImpH.
 
 
 0.890
SDR78219.1
Type VI secretion system protein VasJ.
 
 
 0.867
SDR77748.1
Type VI secretion system protein ImpJ.
 
 
 0.847
SDR77709.1
Type VI secretion system protein ImpL.
 
 
 0.840
SDR78119.1
Type VI secretion system protein.
 
  
 0.838
SDR78003.1
Type VI secretion system protein ImpG.
 
  
 0.812
SDS52466.1
Type VI secretion system secreted protein VgrG.
 
  
 0.787
Your Current Organism:
Pseudomonas sabulinigri
NCBI taxonomy Id: 472181
Other names: JCM 14963, KCTC 22137, P. sabulinigri, Pseudomonas sabulinigri Kim et al. 2009, Pseudomonas sp. J64, strain J64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.