STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS02781.1Amidohydrolase. (342 aa)    
Predicted Functional Partners:
SDS02808.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.770
SDS14608.1
NAD(P)H-flavin reductase.
    
  0.698
SDS49548.1
CDP-4-dehydro-6-deoxyglucose reductase.
    
  0.698
SDS94736.1
Uncharacterized lipoprotein.
  
     0.649
SDT10345.1
Subtilase family protein.
  
     0.607
SDS25244.1
HDOD domain-containing protein.
  
     0.545
SDS26793.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
  
     0.545
SDT06373.1
Protein of unknown function, DUF481.
  
     0.528
SDS26812.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
  
     0.488
SDT13925.1
Hypothetical protein.
  
     0.479
Your Current Organism:
Pseudomonas sabulinigri
NCBI taxonomy Id: 472181
Other names: JCM 14963, KCTC 22137, P. sabulinigri, Pseudomonas sabulinigri Kim et al. 2009, Pseudomonas sp. J64, strain J64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.