STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS04336.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
SDS04280.1
PilZ domain-containing protein.
       0.801
SDS04369.1
Glycerophosphoryl diester phosphodiesterase.
       0.801
SDS75582.1
Chemosensory pili system protein ChpC.
  
     0.627
SDS06475.1
Hypothetical protein.
  
     0.600
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
       0.599
SDS04249.1
Lipoprotein-releasing system permease protein.
       0.599
SDT03699.1
Ion channel.
  
     0.566
SDS75502.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
     0.504
SDS83602.1
Hypothetical protein.
  
     0.454
SDT11154.1
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.443
Your Current Organism:
Pseudomonas sabulinigri
NCBI taxonomy Id: 472181
Other names: JCM 14963, KCTC 22137, P. sabulinigri, Pseudomonas sabulinigri Kim et al. 2009, Pseudomonas sp. J64, strain J64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.