STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS07938.1Predicted arabinose efflux permease, MFS family. (447 aa)    
Predicted Functional Partners:
SDS07894.1
Glucosylglycerol-phosphate synthase.
 
   
 0.704
SDT00382.1
Homoserine dehydrogenase.
    
  0.674
SDR69630.1
Chorismate mutase.
   
 
 0.629
SDS76429.1
Uncharacterized conserved protein, DUF924 family.
      0.496
SDS08012.1
NADPH-dependent FMN reductase.
       0.465
SDS07981.1
Hypothetical protein.
       0.463
Your Current Organism:
Pseudomonas sabulinigri
NCBI taxonomy Id: 472181
Other names: JCM 14963, KCTC 22137, P. sabulinigri, Pseudomonas sabulinigri Kim et al. 2009, Pseudomonas sp. J64, strain J64
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.