STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS13221.1EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant). (767 aa)    
Predicted Functional Partners:
SDS20897.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.996
SDS63522.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.995
SDS14568.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.994
SDS54571.1
Hypothetical protein.
  
 0.993
SDS24100.1
7TMR-DISM extracellular 2.
 
 0.989
SDS05770.1
Two-component system, chemotaxis family, response regulator CheV.
  
 0.988
SDR92518.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.982
SDT03008.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 0.982
SDS67688.1
PAS domain S-box-containing protein.
  
 0.978
SDT06165.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.977
Your Current Organism:
Pseudomonas sabulinigri
NCBI taxonomy Id: 472181
Other names: JCM 14963, KCTC 22137, P. sabulinigri, Pseudomonas sabulinigri Kim et al. 2009, Pseudomonas sp. J64, strain J64
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