STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS35767.1NitT/TauT family transport system permease protein. (272 aa)    
Predicted Functional Partners:
SDS35812.1
NitT/TauT family transport system ATP-binding protein.
 
 
 0.977
SDS35708.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.954
SDS35862.1
Hypothetical protein.
 
   
 0.919
SDS35902.1
Hypothetical protein.
 
     0.908
SDS84063.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.887
SDS53518.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.879
SDS35984.1
Allophanate hydrolase.
 
     0.856
SDS35931.1
Urea carboxylase.
 
     0.843
SDS52995.1
NitT/TauT family transport system ATP-binding protein.
 
 
 0.776
SDS46076.1
Taurine dioxygenase.
  
 
 0.769
Your Current Organism:
Pseudomonas sabulinigri
NCBI taxonomy Id: 472181
Other names: JCM 14963, KCTC 22137, P. sabulinigri, Pseudomonas sabulinigri Kim et al. 2009, Pseudomonas sp. J64, strain J64
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