STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS72331.1Fatty-acid desaturase. (394 aa)    
Predicted Functional Partners:
SDS49548.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
  
 0.718
SDR73450.1
Ribonucleoside-diphosphate reductase beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
  
  
  0.680
SDS14608.1
NAD(P)H-flavin reductase.
  
  
 0.657
SDR91944.1
ferredoxin--NADP+ reductase.
     
 0.636
SDS72303.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
       0.582
SDS85725.1
Fatty acid desaturase.
  
 0.553
SDS72363.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
       0.529
SDS72401.1
ChrR Cupin-like domain-containing protein.
       0.528
SDS42547.1
Alkane 1-monooxygenase.
   
 0.495
SDS53486.1
Fatty acid desaturase.
   
 0.495
Your Current Organism:
Pseudomonas sabulinigri
NCBI taxonomy Id: 472181
Other names: JCM 14963, KCTC 22137, P. sabulinigri, Pseudomonas sabulinigri Kim et al. 2009, Pseudomonas sp. J64, strain J64
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