STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT00674.1Peroxiredoxin, Ohr subfamily. (141 aa)    
Predicted Functional Partners:
SDT00712.1
DNA-binding transcriptional regulator, MarR family.
  
 0.960
SDT08664.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.595
SDS63411.1
Signal transduction histidine kinase.
   
  
 0.586
SDR78474.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
  
  
 0.552
SDS63361.1
PAS domain S-box-containing protein.
   
  
 0.533
SDS76516.1
Heat shock protein HslJ.
  
    0.533
SDS41340.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
    0.523
SDS63833.1
2,5-diketo-D-gluconate reductase B.
  
  
 0.514
SDS45988.1
Hypothetical protein.
   
    0.495
bamE
Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.480
Your Current Organism:
Pseudomonas sabulinigri
NCBI taxonomy Id: 472181
Other names: JCM 14963, KCTC 22137, P. sabulinigri, Pseudomonas sabulinigri Kim et al. 2009, Pseudomonas sp. J64, strain J64
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.