Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gclGlyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family. (580 aa)    
Predicted Functional Partners:
hyi-2
OH-pyruv-isom: hydroxypyruvate isomerase.
 
 
 0.966
LO55_8
Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase.
 
 
 0.948
LO55_5186
Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase.
 
 
 0.938
hyi
OH-pyruv-isom: hydroxypyruvate isomerase; Belongs to the hyi family.
 
 
 0.903
LO55_582
4Fe-4S dicluster domain protein.
     
 0.843
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
    
 0.780
aceA
Isocit_lyase: isocitrate lyase.
     
 0.740
hppr
Hydroxyphenylpyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.703
LO55_1501
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
     
 0.702
eda
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein.
     
 0.700
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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