Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_1002Flavin reductase like domain protein. (197 aa)    
Predicted Functional Partners:
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.797
LO55_1003
Hypothetical protein.
       0.586
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
    
 0.547
ribB-2
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.546
LO55_1004
Hypothetical protein.
       0.491
ssuD
Alkanesulfonate monooxygenase, FMNH(2)-dependent; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
 0.472
LO55_1000
Histidine triad (HIT) protein.
       0.451
LO55_1001
4Fe-4S dicluster domain protein.
       0.445
LO55_3930
Winged helix DNA-binding domain protein.
 
  
  0.445
ribF
ribF: riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.440
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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