STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
LO55_101Electron transfer flavodomain protein. (249 aa)    
Predicted Functional Partners:
LO55_100
Electron transfer flavoFAD-binding domain protein.
 0.998
LO55_3486
Pyridine nucleotide-disulfide oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
 
 0.997
LO55_4019
Electron transfer flavoFAD-binding domain protein.
 0.995
LO55_1359
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
 0.966
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
 0.949
LO55_1001
4Fe-4S dicluster domain protein.
  
 0.937
LO55_3426
4Fe-4S binding domain protein.
  
 0.937
LO55_98
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 
 0.896
LO55_4244
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.895
LO55_977
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.895
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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