STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1100Hypothetical protein; TRSP domain C terminus to PRTase_2 family protein. (395 aa)    
Predicted Functional Partners:
LO55_1102
Phosphoribosyl transferase family protein.
  
 0.990
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 0.988
LO55_1103
C-C Bond Lyase of the TIM-Barrel fold family protein.
 
   
 0.962
LO55_1101
Haloacid dehalogenase-like hydrolase family protein.
 
  
 0.959
LO55_1104
terD domain protein.
 
    0.956
LO55_1099
ATP-grasp domain protein.
 
    0.953
purB
purB: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 0.940
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
 
 0.936
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.925
LO55_1098
terD domain protein.
 
     0.902
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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