STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1153Aman2_put: alpha-1,2-mannosidase family protein. (779 aa)    
Predicted Functional Partners:
LO55_1154
Bacterial regulatory s, lacI family protein.
 
     0.785
LO55_3318
Glycosyl hydrolases 2 family protein.
 
     0.628
gluP
gluP: glucose/galactose transporter WARNING family protein.
 
     0.623
gluP-2
gluP: glucose/galactose transporter WARNING family protein.
 
     0.623
LO55_3036
Hypothetical protein; Glycosyl-hydrolase 97 N-terminal family protein.
 
     0.590
LO55_3707
Glycosyl hydrolase family 20, catalytic domain protein.
 
   
 0.531
LO55_1152
Endoribonuclease L-PSP family protein.
       0.491
LO55_869
Glycosyl hydrolase family 20, catalytic domain protein.
 
   
 0.459
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.