Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_1192Histidine phosphatase super family protein. (177 aa)    
Predicted Functional Partners:
LO55_852
Hypothetical protein.
  
     0.703
LO55_5088
CBS domain protein.
   
  0.697
LO55_2268
Hypothetical protein.
  
   
 0.679
LO55_1730
Amidohydrolase family protein.
  
     0.662
LO55_36
Peptidase M20/M25/M40 family protein.
 
     0.653
LO55_2766
Beta-lactamase family protein.
 
     0.647
pgi
Phosphoglucose isomerase family protein; Belongs to the GPI family.
    
 0.636
LO55_1191
2'-5' RNA ligase superfamily protein.
       0.629
LO55_865
Hypothetical protein.
  
     0.629
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
  
 
 0.626
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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