Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LO55_1295Tetratricopeptide repeat family protein. (356 aa)    
Predicted Functional Partners:
LO55_1297
Type II secretion system (T2SS), F family protein.
 
     0.867
LO55_1298
Type II secretion system (T2SS), F family protein.
 
     0.853
LO55_1300
AAA domain protein.
 
     0.844
LO55_1299
ABC transporter family protein.
 
     0.781
cpaB
pilus_cpaB: Flp pilus assembly protein CpaB.
 
     0.781
LO55_3635
Flp pilus-assembly TadE/G-like family protein.
 
     0.781
LO55_1302
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
 
     0.754
LO55_1304
Sigma-54 interaction domain protein.
 
   
 0.732
LO55_2199
Adenylate and Guanylate cyclase catalytic domain protein.
 
  
  0.712
LO55_1305
Type IV leader peptidase family protein.
 
     0.668
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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