STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1308HD domain protein. (409 aa)    
Predicted Functional Partners:
LO55_3952
GGDEF: diguanylate cyclase domain protein.
 
 0.802
LO55_3172
GGDEF: diguanylate cyclase domain protein.
 
 0.768
LO55_142
GGDEF: diguanylate cyclase domain protein.
  
 0.767
LO55_1791
GAF domain protein.
 
 0.762
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.728
LO55_2831
Sensory box protein.
  
 
 0.713
LO55_525
Sensory box protein.
  
 
 0.713
LO55_1184
HDOD domain protein.
 
 
 0.711
LO55_3464
HAMP domain protein.
  
 0.705
LO55_3639
His Kinase A domain protein.
  
 0.705
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.