STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnBasn_synth_AEB: asparagine synthase. (631 aa)    
Predicted Functional Partners:
LO55_1327
Glycosyl transferases group 1 family protein.
 
  
 0.946
LO55_1323
Pepcterm_polyde: polysaccharide deacetylase, PEP-CTERM locus subfamily protein.
 
   
 0.939
LO55_1324
femAB family protein.
 
     0.939
epsI
epsI_fam: EpsI family protein.
 
     0.934
LO55_1325
Glycosyl transferases group 1 family protein.
 
  
 0.932
LO55_1319
pepcterm_ChnLen: polysaccharide chain length determinant, PEP-CTERM locus subfamily protein.
 
     0.820
LO55_1320
AAA domain protein.
 
    0.820
LO55_4570
Asp_kinase: aspartate kinase domain protein; Belongs to the aspartokinase family.
  
 
 0.810
LO55_1332
Hypothetical protein; Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.800
LO55_1548
Glutamine amidotransferases class-II family protein.
  
 
 0.800
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.