STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1369Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (178 aa)    
Predicted Functional Partners:
LO55_932
Bacterial regulatory s, tetR family protein.
 
     0.567
LO55_921
Bacterial regulatory s, tetR family protein.
 
     0.562
LO55_3686
Bacterial regulatory s, tetR family protein.
 
     0.530
LO55_2673
Carboxymuconolactone decarboxylase family protein.
    
 0.522
LO55_524
Bacterial regulatory s, tetR family protein.
 
     0.454
minD
minD_bact: septum site-determining protein MinD.
       0.442
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
       0.442
LO55_2162
Alpha/beta hydrolase family protein.
  
  
  0.432
LO55_4987
Nitrite and sulphite reductase 4Fe-4S domain protein.
  
  
 0.418
LO55_3329
Hypothetical protein.
 
     0.409
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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