STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gshAGlu_cys_ligase: glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. (531 aa)    
Predicted Functional Partners:
cphA-3
Cya_phycin_syn: cyanophycin synthetase.
   
 0.885
cphA-4
Cya_phycin_syn: cyanophycin synthetase.
   
 0.883
gshB
Glut_syn: glutathione synthase; Belongs to the prokaryotic GSH synthase family.
  
 
 0.859
cphA-2
Cya_phycin_syn: cyanophycin synthetase.
   
 0.774
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]
  
    0.733
uca
Urea_carbox: urea carboxylase.
    
  0.696
metC
cysta_beta_ly_B: cystathionine beta-lyase.
     
 0.690
LO55_5089
cys/Met metabolism PLP-dependent enzyme family protein.
     
 0.690
LO55_1861
Glutamine synthetase, beta-Grasp domain protein.
     
 0.689
LO55_2855
Aminotransferase class I and II family protein.
     
 0.686
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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