Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_143Exonuclease C-terminal family protein. (481 aa)    
Predicted Functional Partners:
ssb
Single-stranded DNA-binding family protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
 
 0.716
recJ
recJ: single-stranded-DNA-specific exonuclease RecJ.
    
 
 0.698
rnhA
RNase H family protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.608
LO55_1043
Pilus assembly, PilP family protein.
  
     0.602
LO55_142
GGDEF: diguanylate cyclase domain protein.
       0.547
LO55_1044
Pilus assembly, PilO family protein.
  
     0.455
LO55_4401
5'-nucleotidase family protein.
  
     0.450
LO55_4233
pilZ domain protein.
  
     0.435
LO55_1045
Fimbrial assembly family protein.
  
     0.419
LO55_1035
Dynamin family protein.
  
     0.408
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.