STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1495Hypothetical protein; Belongs to the UPF0102 family. (119 aa)    
Predicted Functional Partners:
LO55_1496
lppC lipofamily protein.
 
   
 0.853
gmhA-2
SIS domain protein; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
  
 0.719
LO55_734
Sigma-54 interaction domain protein.
 
  
 0.650
LO55_554
Phosphoribosyl transferase domain protein.
 
    0.637
LO55_2942
Stage II sporulation E family protein.
  
    0.626
rsmI
16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.620
LO55_1493
BON domain protein.
     
 0.609
LO55_1447
GGDEF: diguanylate cyclase domain protein.
   
    0.579
LO55_4396
GGDEF: diguanylate cyclase domain protein.
   
    0.579
dprA
dprA: DNA protecting protein DprA.
 
    0.570
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.