Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_1500HMGL-like family protein. (300 aa)    
Predicted Functional Partners:
LO55_1507
enoyl-CoA hydratase/isomerase family protein.
 
 0.996
LO55_1502
D-ala D-ala ligase family protein.
 
 0.983
LO55_1508
Carboxyl transferase domain protein.
 
 0.970
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
 
 0.947
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
 
 0.937
LO55_1409
Aminotransferase class IV family protein.
  
 0.924
LO55_3505
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit.
  
 
 0.919
LO55_3506
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
  
 
 0.917
LO55_4854
Aminotransferase class IV family protein.
  
 0.917
LO55_4000
acCoA-C-Actrans: acetyl-CoA C-acyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.910
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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