STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1518N-acetylmuramoyl-L-alanine amidase family protein. (333 aa)    
Predicted Functional Partners:
LO55_874
Beta-lactamase family protein.
   
 0.822
LO55_81
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein.
 
  
 0.699
LO55_1517
badF/BadG/BcrA/BcrD ATPase family protein.
       0.683
LO55_1516
Glycosyl hydrolase like GH101 family protein.
 
     0.659
LO55_3958
LD-carboxypeptidase family protein.
  
  
 0.649
LO55_1514
Major Facilitator Superfamily protein.
     
 0.631
LO55_1527
LD-carboxypeptidase family protein.
     
 0.601
LO55_3473
D-alanyl-D-alanine carboxypeptidase family protein; Belongs to the peptidase S11 family.
  
  
 0.557
ddpX
D-ala-D-ala dipeptidase family protein; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
       0.548
LO55_1519
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
     
 0.546
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.