STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1574Esterase_phb: esterase, PHB depolymerase family protein. (498 aa)    
Predicted Functional Partners:
LO55_2657
Putative predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.
 
     0.696
phaZ
PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein.
    
 0.507
LO55_3228
Hypothetical protein.
 
 
   0.491
LO55_1575
Hypothetical protein.
       0.480
LO55_4464
Hypothetical protein.
 
 
   0.478
LO55_4512
Hypothetical protein.
 
 
   0.477
LO55_4466
Hypothetical protein.
 
 
   0.469
LO55_4465
Hypothetical protein.
 
 
   0.462
LO55_3803
Alpha/beta hydrolase family protein.
  
  
 0.447
LO55_3108
Hypothetical protein.
  
  
 0.417
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.