STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galKGal_kin: galactokinase; Belongs to the GHMP kinase family. GalK subfamily. (367 aa)    
Predicted Functional Partners:
galT
galT_1: galactose-1-phosphate uridylyltransferase.
 0.999
galT-2
galT_1: galactose-1-phosphate uridylyltransferase.
 0.998
galE
galE: UDP-glucose 4-epimerase GalE; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 0.985
LO55_190
Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer.
 0.978
LO55_157
Glycosyl hydrolases family 2, TIM barrel domain protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.945
LO55_159
Metallopeptidase M24 family protein.
 
   
 0.916
LO55_3815
Aldose 1-epimerase family protein.
  
 0.911
LO55_1632
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
 
 0.829
LO55_1734
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
 
 0.826
LO55_3495
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
 
 0.823
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.